treemapPlot {rrvgo} | R Documentation |
treemapPlot Plot GO terms as a treemap.
treemapPlot(reducedTerms, size = "score", title = "", ...)
reducedTerms |
a data.frame with the reduced terms from reduceSimMatrix() |
size |
what to use as point size. Can be either GO term's "size" or "score" |
title |
title of the plot. Defaults to nothing |
... |
other parameters sent to treemap::treemap() |
A list from the call to the 'treemap()' function is silently returned
## Not run: go_analysis <- read.delim(system.file("extdata/example.txt", package="rrvgo")) simMatrix <- calculateSimMatrix(go_analysis$ID, orgdb="org.Hs.eg.db", ont="BP", method="Rel") scores <- setNames(-log10(go_analysis$qvalue), go_analysis$ID) reducedTerms <- reduceSimMatrix(simMatrix, scores, threshold=0.7, orgdb="org.Hs.eg.db") treemapPlot(reducedTerms) ## End(Not run)