coverageRnaRef {recoup} | R Documentation |
*This function is defunct! Please use
coverageRef
.*
This function fills the coverage
field in the
main input
argument in recoup
function.
coverageRnaRef( input, mainRanges, strandedParams = list(strand=NULL, ignoreStrand=TRUE), rc = NULL)
input |
an input list as in |
mainRanges |
a named |
strandedParams |
see the |
rc |
fraction (0-1) of cores to use in a multicore
system. It defaults to |
Same as input with the ranges
fields filled.
Panagiotis Moulos
# Load some data #data("recoup_test_data",package="recoup") # Note: the figures that will be produced will not look # realistic or pretty and will be "bumpy". This is because # package size limitations posed by Bioconductor guidelines # do not allow for a full test dataset. As a result, the input # below is not an RNA-Seq dataset. Have a look at the # vignette on how to test with more realistic data. # Calculate coverages #testGenomeRanges <- makeGRangesFromDataFrame(df=test.genome, # keep.extra.columns=TRUE) #test.input <- coverageRef( # test.input, # mainRanges=test.exons #)