project_homes {recount3} | R Documentation |
This function finds the home for a given project (study) of interest based
on the organism
and the home_type
.
project_homes( organism = c("human", "mouse"), recount3_url = getOption("recount3_url", "http://duffel.rail.bio/recount3") )
organism |
A |
recount3_url |
A |
By default it reads a small text file from
recount3_url
/organism
/homes_index using readLines()
. This text file
should contain each possible project home per line. See
http://duffel.rail.bio/recount3/human/homes_index for an example.
A character()
vector with the available project_home
options.
Other internal functions for accessing the recount3 data:
annotation_ext()
,
create_rse_manual()
,
file_retrieve()
,
locate_url_ann()
,
locate_url()
,
read_counts()
,
read_metadata()
## List the different available `project_home` options for the default ## arguments project_homes("human") project_homes("mouse") ## Test files project_homes("human", recount3_url = "http://snaptron.cs.jhu.edu/data/temp/recount3" )