eset_to_matrix {quantiseqr} | R Documentation |
Biobase::ExpressionSet
to a gene-expression matrix.Convert a Biobase::ExpressionSet
to a gene-expression matrix.
eset_to_matrix(eset, column)
eset |
|
column |
column name of the |
A matrix with gene symbols as rownames and sample identifiers as colnames.
data(dataset_racle) dim(dataset_racle$expr_mat) library("Biobase") es_racle <- ExpressionSet(assayData = dataset_racle$expr_mat) featureData(es_racle)$gene_symbol <- rownames(dataset_racle$expr_mat) es_racle head(eset_to_matrix(es_racle, "gene_symbol"))