run_all {qckitfastq}R Documentation

Will run all functions in the qckitfastq suite and save the data frames and plots to a user-provided directory. Plot names are supplied by default.

Description

Will run all functions in the qckitfastq suite and save the data frames and plots to a user-provided directory. Plot names are supplied by default.

Usage

run_all(infile, dir)

Arguments

infile

Path to gzipped FASTQ file

dir

Directory to save results to

Value

Generate files from all functions

Examples

infile <- system.file("extdata", "test.fq.gz",
    package = "qckitfastq")
testfolder <- tempdir()
run_all(infile, testfolder)

[Package qckitfastq version 1.10.0 Index]