read_length {qckitfastq}R Documentation

Creates a data frame of read lengths and the number of reads with that read length.

Description

Creates a data frame of read lengths and the number of reads with that read length.

Usage

read_length(fseq, output_file = NA)

Arguments

fseq

a seqTools object produced by seqTools::fastqq on the raw FASTQ file

output_file

File to save data frame to. Default NA.

Value

Data frame of read lengths and number of reads with that length.

Examples

infile <- system.file("extdata","test.fq.gz",
    package = "qckitfastq")
fseq <- seqTools::fastqq(infile,k=6)
read_len <- read_length(fseq)

[Package qckitfastq version 1.10.0 Index]