getConsensusSTRINGIDs {pwOmics}R Documentation

Get consensus graph in STRING IDs.

Description

Get consensus graph in STRING IDs.

Usage

getConsensusSTRINGIDs(data_omics, tps, string_db, updown = FALSE,
  phospho = TRUE)

Arguments

data_omics

OmicsData object.

tps

integer specifying current timepoint under consideration.

string_db

STRING_db object.

updown

boolean value; TRUE in case up- and downregulation should be checked individually for intersection. Type of checking is defined with parameter 'phospho'.

phospho

boolean value; TRUE in case up- and downregulation should be checked based on provided downstream phosphoprotein influence from identifyPR function; FALSE in case up- and downregulation should be checked for without phosphoprotein database knowledge. Default is TRUE.

Value

igraph object consensus graph with STRING IDs (only including proteins and transcription factors).


[Package pwOmics version 1.26.0 Index]