identTFTGsinPWs {pwOmics}R Documentation

Prepare OmicsData object for pathway information.

Description

This function identifies the TFs in the pathway genes and determines their target genes on basis of the given (chosen) TF-target database(s).

Usage

identTFTGsinPWs(data_omics, temp_genelist)

Arguments

data_omics

OmicsData object.

temp_genelist

dataframe of unique gene IDs in PWs.

Value

list with first element being a genelist of the pathways and second being a target gene list of TFs.


[Package pwOmics version 1.26.0 Index]