barplotTimeCoverage {pulsedSilac}R Documentation

Number of detected features per sample

Description

How many proteins/peptides are detected in each sample. Anything else than NA is considered detected.

Usage

barplotTimeCoverage(x, ...)

## S4 method for signature 'SilacProteinExperiment'
barplotTimeCoverage(x, assayName, returnDataFrame = FALSE, conditionCol)

## S4 method for signature 'SilacPeptideExperiment'
barplotTimeCoverage(x, assayName, returnDataFrame = FALSE, conditionCol)

## S4 method for signature 'SilacProteomicsExperiment'
barplotTimeCoverage(x, assayName, returnDataFrame = FALSE, conditionCol)

Arguments

x

A SilacProteinExperiment, SilacPeptideExperiment or a SilacProteomicsExperiment object.

...

Unused.

assayName

Name of the assay to use in the plot.

returnDataFrame

A logical indicating if the data.frame used for the plot should be returned instead.

conditionCol

A character, which indicates the column name in colData(x) that defines the different experiment conditions.

Value

A barplot or a data.frame.

Examples

data('wormsPE')
barplotTimeCoverage(wormsPE, assayName = 'ratio')


[Package pulsedSilac version 1.8.0 Index]