parseTCGAsampleTypes {psichomics} | R Documentation |
Parse sample information from TCGA sample identifiers
parseTCGAsampleTypes( samples, filename = system.file("extdata", "TCGAsampleType.RDS", package = "psichomics") ) parseTCGAsampleInfo(samples, match = NULL)
samples |
Character: sample identifiers |
filename |
Character: path to RDS file containing corresponding types |
match |
Integer: match between samples and subjects ( |
Metadata associated with each TCGA sample
Other functions associated with TCGA data retrieval:
getDownloadsFolder()
,
getTCGAdataTypes()
,
isFirebrowseUp()
,
loadTCGAdata()
parseTCGAsampleTypes(c("TCGA-01A-Tumour", "TCGA-10B-Normal")) samples <- c("TCGA-3C-AAAU-01A-11R-A41B-07", "TCGA-3C-AALI-01A-11R-A41B-07", "TCGA-3C-AALJ-01A-31R-A41B-07", "TCGA-3C-AALK-01A-11R-A41B-07", "TCGA-4H-AAAK-01A-12R-A41B-07", "TCGA-5L-AAT0-01A-12R-A41B-07") parseTCGAsampleInfo(samples)