parseSuppaEvent {psichomics}R Documentation

Parses splicing events of a specific event type from SUPPA

Description

Parses splicing events of a specific event type from SUPPA

Usage

parseSuppaEvent(event)

Arguments

event

Character vector: Splicing event attributes and junction positions

Details

More information about SUPPA available at https://bitbucket.org/regulatorygenomicsupf/suppa

The following event types are available to be parsed:

Value

List with the event attributes (chromosome, strand, event type and the position of the exon boundaries)

Note

It only allows to parse one event type at once.

Examples

event <- "ENSG00000000419;A3:20:49557492-49557642:49557470-49557642:-"
psichomics:::parseSuppaEvent(event)

[Package psichomics version 1.20.2 Index]