getAbsolutePromoterActivity {proActiv} | R Documentation |
Prepare the absolute promoter activity table including the promoter and gene ids
getAbsolutePromoterActivity( junctionReadCounts, promoterAnnotation, log2 = TRUE, pseudocount = 1 )
junctionReadCounts |
Matrix of junction read counts (rows: promoters, cols: samples) |
promoterAnnotation |
A PromoterAnnotation object containing the intron ranges, promoter coordinates and the promoter id mapping |
log2 |
Logical indicating whether log2 read counts should be used (default: TRUE) or not |
pseudocount |
Number to be used for log2 as pseudocount if log2 is TRUE |
data.frame of absolute promoter activity with promoter and gene ids