trans_cor {primirTSS} | R Documentation |
Convert coordinates between different genomes when necessary.
trans_cor(peak, hg_from, hg_to)
peak |
A |
hg_from |
The genome are coverting from. This parameter can be "hg18", "hg19" or "hg38", etc. |
hg_to |
Which type the genome is converting to. This parameter can be "hg18",
"hg19" or "hg38", etc. NOTICE |
A GRanges object.
peak_df <- data.frame(chrom = c("chr7", "chr7", "chr7"), chromStart = c(128043908, 128045075, 128046242), chromEnd = c(128045074, 128046241, 128047408), stringsAsFactors = FALSE) peak <- as(peak_df, "GRanges") trans_cor(peak, "hg19", "hg38")