get_scaled_counts_bulk {ppcseq} | R Documentation |
Get a tibble with scaled counts using TMM
get_scaled_counts_bulk( .data, .sample = NULL, .transcript = NULL, .abundance = NULL, method = "TMM", reference_sample = NULL )
.data |
A tibble |
.sample |
The name of the sample column |
.transcript |
The name of the transcript/gene column |
.abundance |
The name of the transcript/gene abundance column |
method |
A character string. The scaling method passed to the backend function (i.e., edgeR::calcNormFactors; "TMM","TMMwsp","RLE","upperquartile") |
reference_sample |
A character string. The name of the reference sample. If NULL the sample with highest total read count will be selected as reference. |
A tibble including additional columns