removeTinySamples {phemd} | R Documentation |
Removes samples from Phemd that have fewer cells than min_sz
removeTinySamples(obj, min_sz = 20)
obj |
'Phemd' object containing raw expression data and associated metadata |
min_sz |
Minimum number of cells in each sample to be retained |
Note: If used, this function must be called before (and not after) the aggregateSamples
function is called
'Phemd' object containing raw multi-sample expression data and associated metadata (same as input minus removed samples)
my_phemdObj <- createDataObj(all_expn_data, all_genes, as.character(snames_data)) my_phemdObj_lg <- removeTinySamples(my_phemdObj, 10) #removes samples with fewer than 10 cells