assignCellClusterNearestNode {phemd} | R Documentation |
Assigns each cell in cur_cells
to a cluster based on nearest cell in Monocle 2 tree
assignCellClusterNearestNode( cur_cells, ref_cells, ref_cell_labels, cell_model = c("monocle2", "seurat", "phate") )
cur_cells |
Matrix of cells to be assigned to clusters (Dim: num_cells x num_markers) |
ref_cells |
Matrix of cells used to build reference Monocle 2 tree (Dim: num_monocle_cells x num_markers) |
ref_cell_labels |
Vector of length num_monocle_cells containing Monocle 2 cell branch assignments |
cell_model |
Either "monocle2", "seurat", or "phate" depending on method used to model cell state space |
Private method (not exported in namespace). Uses RANN package for fast knn search
Vector of length num_cells representing cluster assignments for each cell in cur_cells
## Not run: cur_cells_cluster_labels <- assignCellClusterNearestNode(cur_cells_expn_data, clustered_cells_expn_data, clustered_cells_cluster_labels, cell_model='monocle2') ## End(Not run)