plotConsProfiles {pRoloc} | R Documentation |
The function plots marker consensus profiles obtained from mrkConsProfile
plotConsProfiles(object, order = NULL, plot = TRUE)
object |
A |
order |
Order for markers (optional). |
plot |
A |
Invisibly returns ggplot2
object.
Tom Smith
library("pRolocdata") data(E14TG2aS1) hc <- mrkHClust(E14TG2aS1, plot = FALSE) mm <- getMarkerClasses(E14TG2aS1) ord <- levels(factor(mm))[order.dendrogram(hc)] fmat <- mrkConsProfiles(E14TG2aS1) plotConsProfiles(fmat, order = ord)