all_genes_babelgene {orthogene}R Documentation

Get all genes: babelgene

Description

Get all genes for a given species using the method "babelgene".

Usage

all_genes_babelgene(
  species,
  run_map_species = TRUE,
  save_dir = tools::R_user_dir("orthogene", which = "cache"),
  use_old = FALSE,
  min_support = 1,
  verbose = TRUE
)

Arguments

species

Species to get all genes for. Will first be standardised with map_species.

run_map_species

Standardise species names with map_species first (Default: TRUE).

save_dir

Directory to save babelgene mapping files to.

use_old

Use an old version of babelgene::orthologs_df (stored on GitHub Releases) for consistency.

verbose

Print messages.

Value

All genes.

Source

babelgene::orthologs_df version differences


[Package orthogene version 1.0.2 Index]