aggregate_rows {orthogene}R Documentation

Aggregate rows of matrix

Description

Aggregate rows of a matrix using a grouping vector.

Usage

aggregate_rows(
  X,
  groupings,
  FUN = "sum",
  method = c("monocle3", "stats", "delayedarray"),
  as_sparse = TRUE,
  as_DelayedArray = TRUE,
  dropNA = TRUE,
  verbose = TRUE
)

Arguments

X

Input matrix.

groupings

Gene groups of the same length as nrow(X).

FUN

Aggregation function (DEFAULT: "sum").

method

Aggregation method.

as_sparse

Convert aggregated matrix to sparse matrix.

as_DelayedArray

Convert aggregated matrix to DelayedArray.

dropNA

Drop genes assigned to NA in groupings.

verbose

Print messages.

Value

Aggregated matrix


[Package orthogene version 1.0.2 Index]