FastqcDataList-class {ngsReports}R Documentation

The FastqcDataList Object Class

Description

The FastqcDataList Object Class [Stable]'

Usage

FastqcDataList(x)

Arguments

x

Character vector of file paths specifying paths to FastQC reports

Value

An object of class FastqcDataList

Slots

...

this can either be a single character vector of paths to FASTQC files, or several instances of .FastqcFile objects

Examples


# Get the files included with the package
packageDir <- system.file("extdata", package = "ngsReports")
fl <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE)

# Load the FASTQC data as a FastqcDataList object
fdl <- FastqcDataList(fl)
fdl


[Package ngsReports version 1.10.0 Index]