maxAdapterContent {ngsReports} | R Documentation |
Get the maximum Adapter Content across one or more FASTQC reports
maxAdapterContent(x, asPercent = TRUE)
x |
Can be a |
asPercent |
|
This will extract the Adapter_Content
module from the
supplied object, and provide a tibble
with the final value for each
file.
A tibble
object containing the percent of reads with each
adapter type at the final position
# Get the files included with the package packageDir <- system.file("extdata", package = "ngsReports") fl <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE) # Load the FASTQC data as a FastqcDataList object fdl <- FastqcDataList(fl) # Get the maxAdapterContent maxAdapterContent(fdl)