importSJ {ngsReports} | R Documentation |
Import the SJ.out.tab files produced by STAR
importSJ(x, stripPaths = TRUE)
x |
vector of file paths to SJ.out.tab files |
stripPaths |
logical(1) Remove directory prefixes from the file paths in x |
Imports one or more splice-junction output files as produced by STAR. If all are located in separated directories with identical names, be sure to set the argument stripPaths = FALSE
All co-ordinates are 1-based, in keeping with the STAR manual
A tibble
Stephen Pederson stephen.pederson@adelaide.edu.au
sjFiles <- system.file("extdata", "SJ.out.tab", package = "ngsReports") # Import leaving the complete file path in the column Filename # The argument srtipPaths is set as TRUE by default df <- importSJ(sjFiles, stripPaths = FALSE)