get_interaction_from_ORA {netOmics} | R Documentation |
Returns results of an ORA analysis as an interaction graph
get_interaction_from_ORA( query, sources = "GO", organism = "hsapiens", signif.value = TRUE )
query |
a vector (or a list) of character with the ID to perform the ORA analysis |
sources |
(optional) a character in (GO, KEGG, REAC, TF, MIRNA, CORUM, HP, HPA, WP) |
organism |
(optional) a character (default = 'hsapiens') |
signif.value |
(optional) a logical, default = ” |
a graph object (or list of graph) containing the interaction between the query and the target terms.
query <- c('IL15', 'CDHR5', 'TGFA', 'C4B') get_interaction_from_ORA(query, sources = 'GO') query <- list('All' = c('IL15', 'CDHR5', 'TGFA', 'C4B'), 'c1' = c('IL15', 'CDHR5', 'TGFA')) get_interaction_from_ORA(query, sources = 'GO')