merging_SE_SVMerge {nanotatoR} | R Documentation |
Merging Dual and DLE, and adding nanotatoR relation ID
merging_SE_SVMerge( labelType = c("SVMerge", "SE", "Both", "SE_Cancer"), SVMerge_path, SVMerge_pattern, SE_path, SE_pattern, Samplecodes, mergeKey, outpath, mergedKeyoutpath, mergedKeyFname, filename, outputMode = c("dataframe", "Text") )
labelType |
character. Type of labels used for mapping. Choices are Dual, DLE and Both. |
SVMerge_path |
character. Path for the Dual labelled cmap |
SVMerge_pattern |
character. pattern of the dual files. |
SE_path |
character. Path for the Dual labelled cmap |
SE_pattern |
character. pattern of the dual files. |
Samplecodes |
character. File containing relations and IDs associated to them. |
mergeKey |
character. File containing sample ID and relation. |
outpath |
character. Path where the merged samples are kept. |
mergedKeyoutpath |
character. File path storing sample name and nanoID key information. |
mergedKeyFname |
character. File name storing sample name and nanoID key information. |
filename |
character. Output file name. |
outputMode |
character. Mode of databse output. Text or dataframe. |
Text files containg merged smaps from different samples
dat1 <- merging_SE_SVMerge ( labelType = c("SE"), SE_path = system.file("extdata", "SoloFile/", package="nanotatoR"), SE_pattern = "*_DLE1_*", Samplecodes = system.file("extdata", "nanotatoR_sample_codes.csv", package="nanotatoR"), mergeKey = system.file("extdata", "nanotatoR_control_sample_codes.csv", package="nanotatoR"), outpath = system.file("extdata", package="nanotatoR"), mergedKeyoutpath = system.file("extdata", package="nanotatoR"), mergedKeyFname = "Sample_index.csv", filename= "nanotatoRControl.txt", outputMode = "dataframe")