clinvar_gene {nanotatoR} | R Documentation |
Extracting genes from clinvar database NCBI.
clinvar_gene(terms, clinvar, downloadClinvar, omimID = NULL)
terms |
Single or Multiple Terms. |
clinvar |
character clinvar database location. |
downloadClinvar |
boolean If TRUE, download the gtr database. Default FALSE. |
omimID |
numeric Omim Id for disease. |
Dataframe returned containing gene lists in entrezid and Gene Symbols, and terms associated with it
terms="Liver cirrhosis" clinvar = system.file("extdata", "localPDB/", package="nanotatoR") downloadClinvar = FALSE ge <- clinvar_gene(terms = terms, clinvar = clinvar, downloadClinvar = downloadClinvar, omimID = "OMIM:118980")