phenoextractHPO_mod {nanotatoR} | R Documentation |
Extract the genes related to a disease or disease alias from HPO database.
phenoextractHPO_mod(keyword, localPDB.path)
keyword |
character. character string: keyword, to search a disease, a clinical feature, or a phenotype. |
localPDB.path |
character. the path of localized public data bases. The default value is set in the working directory. |
subset of HPO and extract the genes and alias for a disease(phenotype), or a clinical feature. Function modified from pheno_extract_HPO function VarFromPDB.
HPO.phenotype = phenoextractHPO_mod("retinoblastoma", localPDB.path = system.file("extdata", "localPDB", package="nanotatoR"))