OverlapRNAseq_solo {nanotatoR} | R Documentation |
Annotating the Overlapping genes with RNAseq expression
OverlapRNAseq_solo(gnsOverlap, SVID, RNASeqData, pattern_Proband = NA)
gnsOverlap |
character. Vector containing overlapping genes. |
SVID |
character. SV Index ID. |
RNASeqData |
dataFrame. RNAseq data with gene names. |
pattern_Proband |
character. Pattern for proband. |
Dataframe containing TPM read counts of overlapping genes.
RNASeqDir = system.file("extdata", package="nanotatoR") returnMethod="dataFrame" datRNASeq <- RNAseqcombine_solo(RNASeqDir = RNASeqDir, returnMethod = returnMethod) gnsOverlap <- c("AGL") SVID = 397 datgnovrlap <- OverlapRNAseq_solo(gnsOverlap = gnsOverlap, SVID = SVID, RNASeqData = datRNASeq, pattern_Proband = "*_P_*")