create_sbs192_table {musicatk} | R Documentation |
Uses a genome object to find context and generate standard SBS192 table using transcript strand
create_sbs192_table(musica, g, strand_type, overwrite = FALSE)
musica |
Input samples |
g |
A BSgenome object indicating which genome reference the variants and their coordinates were derived from. |
strand_type |
Transcript_Strand or Replication_Strand |
overwrite |
Overwrite existing count table |
Returns the created SBS192 count table object built using either transcript strand or replication strand