muscle-package {muscle}R Documentation

Multiple Sequence Alignment

Description

MUSCLE performs multiple sequence alignments of nucleotide and amino acid sequences.

Details

Details about the algorithm can be found on the MUSCLE website:
http://www.drive5.com/muscle/

Author(s)

Algorithm: Robert C. Edgar

R port: Alex T. Kalinka alex.t.kalinka@gmail.com

References

Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32, 1792-1797.

See Also

muscle, umax

Examples

## Align sequences in an XStringSet object.
## Not run: 
aln <- muscle(stringset = umax)

## End(Not run)

[Package muscle version 3.36.0 Index]