add_inverse_strand {multicrispr} | R Documentation |
Add inverse strand
add_inverse_strand(gr, verbose = FALSE, plot = FALSE, ...)
gr |
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verbose |
TRUE or FALSE (default) |
plot |
TRUE or FALSE (default) |
... |
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# PE example #----------- require(magrittr) bsgenome <- BSgenome.Hsapiens.UCSC.hg38::BSgenome.Hsapiens.UCSC.hg38 gr <- char_to_granges(c(PRNP = 'chr20:4699600:+', # snp HBB = 'chr11:5227002:-', # snp HEXA = 'chr15:72346580-72346583:-', # del CFTR = 'chr7:117559593-117559595:+'), # ins bsgenome) add_inverse_strand(gr, plot = TRUE) # TFBS example #------------- bedfile <- system.file('extdata/SRF.bed', package='multicrispr') gr <- bed_to_granges(bedfile, genome = 'mm10') add_inverse_strand(gr)