AAmotifAlignment {motifStack} | R Documentation |
align AA motifs for plotting motifs stack
AAmotifAlignment(pcms, threshold = 0.4, minimalConsensus = 0)
pcms |
a list of position frequency matrices, pfms must be a list of class pcm |
threshold |
information content cutoff threshold for useful postions |
minimalConsensus |
minimal length of consensus for alignment |
a list of aligned motifs
pcms<-importMatrix(system.file("extdata", "prot.meme", package="motifStack"), format="meme", to="pfm") motifs<-AAmotifAlignment(pcms)