plot_rho_delta {monocle}R Documentation

Plots the decision map of density clusters .

Description

Plots the decision map of density clusters .

Usage

plot_rho_delta(cds, rho_threshold = NULL, delta_threshold = NULL)

Arguments

cds

CellDataSet for the experiment after running clusterCells_Density_Peak

rho_threshold

The threshold of local density (rho) used to select the density peaks for plotting

delta_threshold

The threshold of local distance (delta) used to select the density peaks for plotting

Examples

## Not run: 
library(HSMMSingleCell)
HSMM <- load_HSMM()
plot_rho_delta(HSMM)

## End(Not run)

[Package monocle version 2.22.0 Index]