minSpanningTree {monocle} | R Documentation |
Retrieves the minimum spanning tree (MST) that Monocle constructs during orderCells(). This MST is mostly used in plot_spanning_tree to help assess the accuracy of Monocle\'s ordering.
minSpanningTree(cds)
cds |
expression data matrix for an experiment |
An igraph object representing the CellDataSet's minimum spanning tree.
## Not run: T <- minSpanningTree(HSMM) ## End(Not run)