diff_test_helper {monocle}R Documentation

Helper function for parallel differential expression testing

Description

test

Usage

diff_test_helper(
  x,
  fullModelFormulaStr,
  reducedModelFormulaStr,
  expressionFamily,
  relative_expr,
  weights,
  disp_func = NULL,
  verbose = FALSE
)

Arguments

x

test

fullModelFormulaStr

a formula string specifying the full model in differential expression tests (i.e. likelihood ratio tests) for each gene/feature.

reducedModelFormulaStr

a formula string specifying the reduced model in differential expression tests (i.e. likelihood ratio tests) for each gene/feature.

expressionFamily

specifies the VGAM family function used for expression responses

relative_expr

Whether to transform expression into relative values

weights

test

disp_func

test

verbose

Whether to show VGAM errors and warnings. Only valid for cores = 1.


[Package monocle version 2.22.0 Index]