extract_good_branched_ordering {monocle}R Documentation

Extract a linear ordering of cells from a PQ tree

Description

Extract a linear ordering of cells from a PQ tree

Usage

extract_good_branched_ordering(
  orig_pq_tree,
  curr_node,
  dist_matrix,
  num_branches,
  reverse_main_path = FALSE
)

Arguments

orig_pq_tree

The PQ object to use for ordering

curr_node

The node in the PQ tree to use as the start of ordering

dist_matrix

A symmetric matrix containing pairwise distances between cells

num_branches

The number of outcomes allowed in the trajectory.

reverse_main_path

Whether to reverse the direction of the trajectory


[Package monocle version 2.22.0 Index]