net_cls {mina}R Documentation

Network clustering of sparsed adjacacency matrix.

Description

Network clustering of sparsed adjacacency matrix.

Usage

net_cls(x, method, ...)

Arguments

x

An object of class 'mina' with 'adj' defined.

method

The clustering method used.

...

Additional parameters.

Value

The network clustering results.

Examples

maize <- new("mina", tab = maize_asv2, des = maize_des2)
maize <- norm_tab(maize, method = "raref", depth = 1000)
maize <- fit_tabs(maize)
maize <- adj(maize, method = "spearman")
maize <- net_cls(maize, method = "mcl", cutoff = 0.4, neg = FALSE)

[Package mina version 1.2.0 Index]