net_cls_tab {mina} | R Documentation |
Get the cluster table 'cls_tab' from 'norm' and 'cls'.
net_cls_tab(x, uw = FALSE)
x |
An object of class 'mina' with 'norm' and 'cls' defined. |
uw |
By summing up the number of present components of each cluster instead of relative abundances, default is FALSE. |
The network cluster relative abundance table.
maize <- new("mina", tab = maize_asv2, des = maize_des2) maize <- norm_tab(maize, method = "raref", depth = 1000) maize <- fit_tabs(maize) maize <- adj(maize, method = "spearman") maize <- net_cls(maize, method = "ap", cutoff = 0.5) maize <- net_cls_tab(maize)