adj,mina,ANY-method {mina} | R Documentation |
Calculate the adjacency matrix of 'norm' by correlation with 'mina' class object as input.
## S4 method for signature 'mina,ANY' adj(x, method, sig = FALSE, threads = 80, nblocks = 400, ...) ## S4 method for signature 'mina,character' adj(x, method, sig = FALSE, threads = 80, nblocks = 400, ...)
x |
An object of the class mina with 'norm' defined or a 'norm' matrix. |
method |
The correlation coeffient used for adjacacency matrix. |
sig |
The asymtotic P-values, only applicable for Pearson and Spearman methods, FALSE by default. |
threads |
The number of threads used for parallel running, 80 by default. |
nblocks |
The number of row/column for splitting sub-matrix, 400 by default. |
... |
Additional parameters. |
x The same 'mina' object with 'adj' added.
maize <- new("mina", tab = maize_asv2, des = maize_des2) maize <- norm_tab(maize, method = "raref") maize <- fit_tabs(maize) maize <- adj(maize, method = "spearman", sig = FALSE)