net_dis_plot {mina} | R Documentation |
Visulization of network distance, average distances are used for tile plot.
Visulization of network distance, average distances are used for tile plot.
net_dis_plot(x, d = "BS", ...) ## S4 method for signature 'mina' net_dis_plot(x, d = "BS", sig = TRUE)
x |
An object of 'mina' with slot 'dis_stat' defined. |
d |
The distance to be plotted, could be "BS" or "PM". |
... |
Additional parameters. |
sig |
If 'TRUE', indicating significant distance with gold guild. |
p The plotted figure.
p The plotted figure.
maize <- new("mina", tab = maize_asv2, des = maize_des2) maize <- norm_tab(maize, method = "raref") maize <- fit_tabs(maize) maize <- bs_pm(maize, group = "Compartment") maize <- net_dis(maize, method = "Jaccard") p <- net_dis_plot(maize) maize <- new("mina", tab = maize_asv2, des = maize_des2) maize <- norm_tab(maize, method = "raref") maize <- fit_tabs(maize) maize <- bs_pm(maize, group = "Compartment") maize <- net_dis(maize, method = "Jaccard") p <- net_dis_plot(maize, d = "BS")