bfratio {microbiome}R Documentation

Bacteroidetes-Firmicutes Ratio

Description

Estimates Bacteroidetes-Firmicutes ratio.

Usage

bfratio(x, b = "Bacteroidetes", f = "Firmicutes")

Arguments

x

phyloseq-class object

b

Term used for Bacteroidetes

f

Term used for Firmicutes

Value

Numeric vector (B/F-ratio)

Author(s)

Contact: Leo Lahti microbiome-admin@googlegroups.com

References

See citation('microbiome')

Examples

data(dietswap)
bf <- bfratio(dietswap, "Bacteroidetes", "Firmicutes")

[Package microbiome version 1.16.0 Index]