core_matrix {microbiome} | R Documentation |
Creates the core matrix.
core_matrix(x, prevalences = seq(0.1, 1, , 1), detections = NULL)
x |
|
prevalences |
a vector of prevalence percentages in [0,1] |
detections |
a vector of intensities around the data range |
Estimated core microbiota
Contact: Jarkko Salojarvi microbiome-admin@googlegroups.com
A Salonen et al. The adult intestinal core microbiota is determined by analysis depth and health status. Clinical Microbiology and Infection 18(S4):16 20, 2012. To cite the microbiome R package, see citation('microbiome')
# Not exported #data(peerj32) #core <- core_matrix(peerj32$phyloseq)