plot_abundance {microbiomeMarker} | R Documentation |
plot the abundances of markers
plot_abundance(mm, label_level = 1, max_label_len = 60, markers = NULL, group)
mm |
a |
label_level |
integer, number of label levels to be displayed, default
|
max_label_len |
integer, maximum number of characters of feature label,
default |
markers |
character vector, markers to display, default |
group |
character, the variable to set the group |
a ggplot2::ggplot
object.
data(enterotypes_arumugam) mm <- run_limma_voom( enterotypes_arumugam, "Enterotype", contrast = c("Enterotype 3", "Enterotype 2"), pvalue_cutoff = 0.01, p_adjust = "none" ) plot_abundance(mm, group = "Enterotype")