transform_abundances {microbiomeMarker} | R Documentation |
otu_table
sample by sampleTransform the taxa abundances in otu_table
sample by sample, which means
the counts of each sample will be transformed individually.
transform_abundances(object, transform = c("identity", "log10", "log10p"))
object |
|
transform |
transformation to apply, the options inclulde:
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A object matches the class of argument object
with the transformed
otu_table
.
data(oxygen) x1 <- transform_abundances(oxygen) head(otu_table(x1), 10) x2 <- transform_abundances(oxygen, "log10") head(otu_table(x2), 10) x3 <- transform_abundances(oxygen, "log10p") head(otu_table(x3), 10)