makeTreeSummarizedExperimentFromPhyloseq {mia} | R Documentation |
phyloseq
object to a TreeSummarizedExperiment
makeTreeSummarizedExperimentFromPhyloseq
converts phyloseq
objects into TreeSummarizedExperiment
objects.
makeTreeSummarizedExperimentFromPhyloseq(obj)
obj |
a |
All data stored in a phyloseq
object is transfered.
An object of class TreeSummarizedExperiment
makeSummarizedExperimentFromBiom
makeTreeSummarizedExperimentFromDADA2
loadFromQIIME2
loadFromMothur
if (requireNamespace("phyloseq")) { data(GlobalPatterns, package="phyloseq") makeTreeSummarizedExperimentFromPhyloseq(GlobalPatterns) data(enterotype, package="phyloseq") makeTreeSummarizedExperimentFromPhyloseq(enterotype) data(esophagus, package="phyloseq") makeTreeSummarizedExperimentFromPhyloseq(esophagus) }