checkMiRNAAlive {miRBaseConverter} | R Documentation |
This function checks the miRNA status (Alive or Dead) in the latest miRBase version.
checkMiRNAAlive(Accessions, verbose = TRUE)
Accessions |
A character vector representing the miRNA Accessions in miRBase. |
verbose |
Logical value. If true, the dead miRNAs will be printed the console. |
A character vector of Accessions for all alive miRNAs. The names of the return vector are the position indexes in the input Accessions.
Xu, Taosheng taosheng.x@gmail.com
data(miRNATest) ## The input is miRNA Accessions Accessions=miRNATest$Accession alive_Accession1=checkMiRNAAlive(Accessions) ##The input is miRNA names miRNANames=miRNATest$miRNA_Name version=checkMiRNAVersion(miRNANames,verbose = TRUE) result=miRNA_NameToAccession(miRNANames,version = version) Accessions=result$Accession alive_Accession2=checkMiRNAAlive(Accessions)