reformatSCE {methylscaper}R Documentation

This is an internal function for now and a place-holder in case SingleCellExperiment may be used in the future. We may need to update this later. Assumes rownames are formatted like chr_pos and there are two assays. The assay names are 'methylation_met' for endogenous methylation and 'methylation_acc' for accessibility.

Description

This is an internal function for now and a place-holder in case SingleCellExperiment may be used in the future. We may need to update this later. Assumes rownames are formatted like chr_pos and there are two assays. The assay names are 'methylation_met' for endogenous methylation and 'methylation_acc' for accessibility.

Usage

reformatSCE(dataIn)

Arguments

dataIn

Input SCE object passed to the prepSC() function.

Value

List object containing the met and acc tables.


[Package methylscaper version 1.2.0 Index]