methyl_average_status {methylscaper}R Documentation

Calculate the average methylation/accessibility status across all cells/molecules.

Description

Calculate the average methylation/accessibility status across all cells/molecules.

Usage

methyl_average_status(orderObject, window_length = 20, makePlot = TRUE, ...)

Arguments

orderObject

An object of class orderObject

window_length

Length of the window to be used to compute a moving average. Default is 20.

makePlot

Logical, indicates whether to generate a line plot of average status.

...

Addition parameters used by the plot function.

Value

The proportion of methylated bases for each cell/molecule within a defined moving window. Output is a list with elements "meth_avg" and "acc_avg", indicating endogenous or accessible methylation respectively.

Examples

 
data(singlemolecule_example)

orderObj <- initialOrder(singlemolecule_example, Method = "PCA")
methyl_average_status(orderObj, makePlot = TRUE)


[Package methylscaper version 1.2.0 Index]