calculateSignificantLevel {methylInheritance} | R Documentation |
Calculate significant level for hypo and hyper conserved elements using permutation results as well as observed results
calculateSignificantLevel(formatForGraphDataFrame)
formatForGraphDataFrame |
a |
a list containing two elements:
HYPER
a double
, the significant level for the
hyper differentially methylated conserved elements
HYPO
a double
, the significant level for the
hypo differentially methylated conserved elements
Astrid Deschenes, Pascal Belleau
## Loading dataset containing all results data(methylInheritanceResults) ## Extract information for the intersection between conserved differentially ## methylated sites (type = sites) between the intersection of 2 ## generations (inter = i2): F2 and F3 (position = 2) info <- extractInfo(allResults = methylInheritanceResults, type = "sites", inter="i2", 2) ## Create graph methylInheritance:::calculateSignificantLevel(info)