plot_density {methrix} | R Documentation |
Density Plot of β-Values
plot_density( m, ranges = NULL, n_cpgs = 25000, pheno = NULL, col_palette = "RdYlGn" )
m |
Input |
ranges |
genomic regions to be summarized. Could be a data.table with 3 columns (chr, start, end) or a |
n_cpgs |
Use these many random CpGs for plotting. Default 25000. Set it to |
pheno |
Column name of colData(m). Will be used as a factor to color different groups in the violin plot. |
col_palette |
Name of the RColorBrewer palette to use for plotting. |
ggplot2 object
data('methrix_data') plot_density(m = methrix_data)