methrix_report {methrix} | R Documentation |
Creates a detailed interative html summary report from Methrix object. If the directory contains required files (from previous run), it directly proceeds to generate html report.
methrix_report( meth, output_dir = NULL, recal_stats = FALSE, plot_beta_dist = TRUE, beta_nCpG = 10000, prefix = NULL, n_thr = 4 )
meth |
|
output_dir |
Output directory name where the files should be saved. If |
recal_stats |
Whether summary statistics should be recalculated? If you are using subsetted methrix object set this to TRUE. |
plot_beta_dist |
Default TRUE. Can be time consuming. |
beta_nCpG |
Number of CpGs rto use for estimating beta value distribution. Default 10000 |
prefix |
If provided, the name of the report and the intermediate files will start with the prefix. |
n_thr |
Default 4. Only used if |
an interactive html report
## Not run: data('methrix_data') methrix::methrix_report(meth = methrix_data) ## End(Not run)