distanceCorrelation {methimpute}R Documentation

Distance correlation

Description

Compute the distance correlation from a methimputeData object.

Usage

distanceCorrelation(data, distances = 0:50, separate.contexts = FALSE)

Arguments

data

A methimputeData object.

distances

An integer vector specifying the distances for which the correlation will be calculated.

separate.contexts

A logical indicating whether contexts are treated separately. If set to TRUE, correlations will only be calculated between cytosines of the same context.

Value

A list() with an array containing the correlation values and the corresponding ggplot.

Examples

## Get some toy data
file <- system.file("data","arabidopsis_toydata.RData",
                    package="methimpute")
data <- get(load(file))
distcor <- distanceCorrelation(data)
print(distcor$plot)


[Package methimpute version 1.16.0 Index]