bed_file_filter {metagene} | R Documentation |
Extract a list of ranges defined by the bed_file_content_gr argument from the ebgwot GRangesList. Equivalent to the exonsByOverlaps of GenomicFeatures.
bed_file_filter(ebgwot, bed_file_content_gr, reduce = TRUE)
ebgwot |
A |
bed_file_content_gr |
A |
reduce |
If the returned |
A GRanges
object that contains exons by genes selected.
## Not run: require(EnsDb.Hsapiens.v86) edb <- EnsDb.Hsapiens.v86 quantification_files <- 'file_path' ebgwot <- exon_by_gene_with_observed_transcripts(edb, quantification_files) bed_file_content_gr <- GRanges("chr16",ranges = IRanges(start=23581002, end=23596356)) bed_file_filter(ebgwot, bed_file_content_gr) ## End(Not run)