compute_sample_scores {mdp}R Documentation

Compute sample scores for each pathway

Description

Compute sample scores for each pathway

Usage

compute_sample_scores(zscore, perturbed_genes, control_samples,
  test_samples, pathways, pdata)

Arguments

zscore

zscore data frame

perturbed_genes

list of pertured genes

control_samples

vector of control sample names

test_samples

vector of test sample names

pathways

list of pathways

pdata

phenotypic data with Sample and Class columns

Value

data frame of sample scores


[Package mdp version 1.14.0 Index]