getWordcloud {loci2path} | R Documentation |
This function draw the enrichment heatmap using
wordcloud
package.
getWordcloud(res, ...) ## S4 method for signature 'loci2pathResult' getWordcloud(res, min.freq.tissue = 5, min.freq.gset = 5, max.words = 50)
res |
query result from function query.egset.list() |
... |
additional params |
min.freq.tissue |
minimum frequency of tissue/cell to be plotted in the word cloud |
min.freq.gset |
minimum frequency of geneset to be plotted in the word cloud |
max.words |
maximum words to be generated |
empty
result <- query(query.gr=query.gr, loci=eset.list, path=biocarta) getWordcloud(result, min.freq.tissue=2, min.freq.gset=1)