indRender {keggorthology} | R Documentation |
indented textual rendering of nodes of a hierarchical graph
indRender(klike, from=nodes(klike)[1], indent=" ")
klike |
a graph, with tree structure similar to |
from |
a node name from which the rendering should proceed to all leaves |
indent |
token to use for indentation – will be replicated to depth of node to be rendered to its left |
Based on keggorthology read of KEGG orthology, March 2 2010.
Specifically, we run wget on
ftp://ftp.genome.jp/pub/kegg/brite/ko/ko00001.keg and use parsing
and modeling code given in inst/keggHTML to generate a data frame
respecting the hierarchy, and then keggDF2graph
to
construct the graph.
NULL
Vince Carey <stvjc@channing.harvard.edu>
data(KOgraph) indRender(KOgraph, "Human Diseases")