CircosArc {interacCircos} | R Documentation |
Create the CNV plot without value, Gene domain, Chromosome band
CircosArc( modulename, compareGroup = 1, outerRadius = 150, innerRadius = 130, opacity = 1, animationDisplay = FALSE, animationTime = 2000, animationDelay = 20, animationType = "bounce", data, ... )
modulename |
The name of the new module |
compareGroup |
The group number of this module in compare module |
innerRadius, outerRadius |
Where the module should begin and end |
opacity |
The opacity for arc |
animationDisplay |
Whether display animation |
animationTime, animationDelay, animationType |
The time, delay and display type for animation |
data |
A list of arc with details including chr, start, end, color, des, link and html. Details can be found on document |
... |
Ignored |
The module tracks for arc modules
arcData<-arcExample Circos(CircosArc('Arc01', outerRadius = 212, innerRadius = 224, data=arcData), genome=list("EGFR"=1211),outerRadius = 220,genomeFillColor = c("grey"))