CircosWig {interacCircos} | R Documentation |
Create a multi-layer line plot
CircosWig( modulename, compareGroup = 1, maxRadius = 108, minRadius = 95, direction = "out", ValueAxisManualScale = FALSE, ValueAxisMaxScale = 10, ValueAxisMinScale = 0, color = "red", opacity = 1, strokeColor = "black", strokeWidth = 1, strokeType = "cardinal", animationDisplay = FALSE, animationTime = 2000, animationDelay = 20, animationType = "bounce", data, ... )
modulename |
The name of the new module |
compareGroup |
The group number of this module in compare module |
maxRadius, minRadius |
Where the module should begin and end |
direction |
The direction of plot, either inside or outside |
ValueAxisManualScale |
Whether manually control the scale of value |
ValueAxisMaxScale, ValueAxisMinScale |
The max and min scale value for manually control |
color |
Color for plot |
opacity |
Opacity for plot |
strokeColor |
The color for stroke |
strokeWidth |
The width for stroke |
strokeType |
Line type for stroke, could be linear, cardinal, basis and monotone |
animationDisplay |
Whether display animation |
animationTime, animationDelay, animationType |
The time, delay and display type for animation |
data |
A list of value with details including chr, pos, des, value and html. Details can be found on document |
... |
Ignored |
The module tracks for wig modules
wigData<-wigExample Circos(CircosWig('WIG01', data = wigData, maxRadius= 200,minRadius= 150,strokeColor= "darkblue", color= "lightblue",strokeType= "cardinal")+CircosBackground('BG01',minRadius = 205,maxRadius = 150) ,genome=list("chr8"=1000),outerRadius = 220)