CircosLink {interacCircos} | R Documentation |
Create a link of two specific region in genome
CircosLink( modulename, compareGroup = 1, radius = 108, fillColor = "red", width = 3, type = "Q", displayLinkAxis = TRUE, axisColor = "#B8B8B8", axisWidth = 0.5, axisPad = 3, displayLinkLabel = TRUE, labelColor = "red", labelSize = 13, labelPad = 8, animationDisplay = FALSE, animationDirection = "1to2", animationTime = 2000, animationDelay = 20, animationType = "bounce", data, ... )
modulename |
The name of the new module |
compareGroup |
The group number of thic module in compare module |
radius |
Radius of link circle |
fillColor |
Color for link |
width |
Width for link |
type |
Type of link, could be Q/S/T |
displayLinkAxis |
Whether display axis for link or not |
axisColor |
The color for axis |
axisWidth |
The width for axis |
axisPad |
The pad for axis |
displayLinkLabel |
Whether display label for link or not |
labelColor |
The color for label |
labelSize |
The size for label |
labelPad |
The pad for label |
animationDisplay |
Whether display animation |
animationDirection |
The direction of link animation, could be 1to2 or 2to1 |
animationTime, animationDelay, animationType |
The time, delay and display type for animation |
data |
A list of link with details including g1chr, g1start, g1end, g2chr, g2start, g2end, g1name, g2name, fusion, link and html. Details can be found on document |
... |
Ignored |
The module tracks for link modules
linkData<-linkExample Circos(CircosLink('LINK', data = linkData,LinkRadius= 140,fillColor= "#9e9ac6",width= 2, axisPad= 3,labelPad=8,animationDisplay=TRUE,animationDirection="1to2", animationType= "linear" ))