popCellPicker {imageHTS} | R Documentation |
Pop up the imageHTS web modules cellPicker and webQuery, using the web browser.
popCellPicker(x, uname, spot, id.highlight, access='server', browse=TRUE) popWebQuery(x, access='server', browse=TRUE)
x |
An imageHTS object. |
uname |
A character vector, containing the well names to
annotate. See |
spot |
An optional numeric vector, containing the spot indexes of the wells to annotate. If missing, only the first spot is used. |
id.highlight |
An optional numeric vector, containing the object indexes to highlight. If missing, no object is highlighted. |
access |
A character string indicating how to access the
data. Valid values are |
browse |
A logical indicating whether the web browser should be
loaded. Default is |
cellPicker must be installed using installCellPicker
before
using popCellPicker
on the local project directory. If present,
the numeric vector spot
must have the same length as
uname
.
webQuery must be installed using installWebQuery
before
using popWebQuery
on the local project directory.
A character string containing the URL to access the cellPicker or the webQuery web module.
Gregoire Pau, gregoire.pau@embl.de, 2010
installCellPicker
, installWebQuery
, getUnames
## initialize imageHTS object using the remote kimorph screen local = tempdir() server = 'http://www.huber.embl.de/cellmorph/kimorph/' x = parseImageConf('conf/imageconf.txt', localPath=local, serverURL=server) if (interactive()) { popCellPicker(x, uname=c('002-02-A11', '001-01-C17')) popWebQuery(x) }