strandBinCounts {icetea} | R Documentation |
Perform stranded Bin counts
strandBinCounts( bam.files, restrictChrs, bam_param, bp_param, window_size, sliding = FALSE, func )
bam.files |
character vector. BAM files to use |
restrictChrs |
character vector. chromosomes to use |
bam_param |
ScanBAMParams |
bp_param |
BPPARAM |
window_size |
integer. size of window to use |
sliding |
logical. perform sliding window counts? |
func |
function to preprocess reads |
RangedSE object with forward and reverse strand counts