diffQCplots {icetea} | R Documentation |
Make DESeq2 or edgeR QC plots
diffQCplots(method, fit, y, designMat)
method |
one of "DESeq2" or "edgeR" |
fit |
output of fitDiffTSS (if method = "edgeR") |
y |
output of fitDiffTSS (if method = "DESeq2") |
designMat |
design matrix (data frame) |
Sparsity, dispersion and PCA plot (if method = DESeq2), BCV, dispersion and MDS plot (if method = "edgeR")