.hiearchy_map {hypeR} | R Documentation |
Plot hiearchy map
.hiearchy_map( hyp_df, rgsets_obj, pval_cutoff = 1, fdr_cutoff = 1, val = c("fdr", "pval"), top = NULL, title = "", graph = FALSE )
hyp_df |
A dataframe from a hyp object |
rgsets_obj |
A relatonal geneset from a hyp object |
pval_cutoff |
Filter results to be less than pval cutoff |
fdr_cutoff |
Filter results to be less than fdr cutoff |
val |
Choose significance value displayed when hovering nodes e.g. c("fdr", "pval") |
top |
Limit number of pathways shown |
title |
Plot title |
graph |
Return an igraph object instead |
A visNetwork object