makeUCSCsession {hiAnnotator}R Documentation

Initiate UCSC genome browser session given the freeze argument.

Description

Initiate UCSC genome browser session given the freeze argument.

Usage

makeUCSCsession(freeze = "hg19")

Arguments

freeze

one of following: hg19, mm8, rheM, etc. Default is hg19.

Value

browser session object compatible with rtracklayer functions.

See Also

getUCSCtable, makeGRanges, getNearestFeature, getSitesInFeature

Examples

## Not run: 
session <- makeUCSCsession()
genome(session)
session <- makeUCSCsession("mm8")
genome(session)

## End(Not run)

[Package hiAnnotator version 1.28.0 Index]