getUCSCtable {hiAnnotator} | R Documentation |
Obtain a UCSC annotation table given the table & track name.
getUCSCtable(tableName, trackName, bsession = NULL, freeze = "hg19", ...)
tableName |
Name of the annotation table as it appears on UCSC browser. |
trackName |
Name of the track annotation table as it appears in on UCSC browser. |
bsession |
UCSC session object returned by |
freeze |
one of following: hg19, mm8, rheM, etc. Default is hg19. |
... |
Arguments to be passed to |
a dataframe containing the annotation data.
makeUCSCsession
, getNearestFeature
,
getSitesInFeature
.
## Not run: refflat <- getUCSCtable("refFlat", "RefSeq Genes") ## same as above ## refflat <- getUCSCtable("refFlat", "RefSeq Genes", bsession=session,freeze="hg19") ## End(Not run)