plot_regress {granulator} | R Documentation |
plot_regress
depicts the measured cell type
proportions (x-axis) vs. the estimated proportions (y-axis).
plot_regress(benchmarked, method = "svr", signature = "sig1")
benchmarked |
List: output object from function |
method |
Character string with name of method to be regressed. |
signature |
Character string with name of signature to be regressed. |
Plot showing regression of estimated versus measured cell type coefficients.
Vincent Kuettel, Sabina Pfister
# load demo PBMCS data load_ABIS() # deconvolute decon <- deconvolute(m = bulkRNAseq_ABIS, sigMatrix = sigMatrix_ABIS_S0) # bechmark bench <- benchmark(deconvoluted = decon, ground_truth = groundTruth_ABIS) # plot regress plot_regress(benchmarked = bench, method = 'svr', signature = 'sig1')