getPlots {genotypeeval}R Documentation

Getter for VCFQAReport class to return plots slot.

Description

Getter for VCFQAReport class to return plots slot.

Usage

getPlots(Object)

Arguments

Object

Object of Class VCFQAReport

Value

List of named ggplots

Examples

vcffn <- system.file("ext-data", "chr22.GRCh38.vcf.gz", package="genotypeeval")
mydir <- paste(dirname(vcffn), "/", sep="")
myfile <-basename(vcffn)
svp <- ScanVcfParam(which=GRanges("22", IRanges(0,200e5)), geno="GT")
vcfparams <- VCFQAParam(count.limits=c(3014580000, Inf), readdepth.target = 30)
vcf <- ReadVCFData(mydir, myfile, "GRCh38")
ev <- VCFEvaluate(vcf, vcfparams)
getPlots(ev)

[Package genotypeeval version 1.26.0 Index]