rareCompare {genotypeeval}R Documentation

Comparator to rare variants. Rare is defined as 0.01 percent or less

Description

Comparator to rare variants. Rare is defined as 0.01 percent or less

Usage

rareCompare(x, gr, percent.h)

Arguments

x

myvcf of interest

gr

GRanges of gold comparator

percent.h

what percent higher hets than hom_alt?

Value

list with name, logical (passed or not), numeric (proportion hets in rare)


[Package genotypeeval version 1.26.0 Index]