ssp2006 {genefu}R Documentation

SSP2006 classifier for identification of breast cancer molecular subtypes (Hu et al 2006)

Description

List of parameters defining the SSP2006 classifier for identification of breast cancer molecular subtypes (Hu et al 2006).

Usage

data(ssp2006)
data(ssp2006.robust)
data(ssp2006.scale)

Format

List of parameters for SSP2006:

Details

Three versions of the model are provided, each of ones differs by the gene expressions standardization method since it has an important impact on the subtype classification:

Source

http://www.biomedcentral.com/1471-2164/7/96

References

Hu, Zhiyuan and Fan, Cheng and Oh, Daniel and Marron, JS and He, Xiaping and Qaqish, Bahjat and Livasy, Chad and Carey, Lisa and Reynolds, Evangeline and Dressler, Lynn and Nobel, Andrew and Parker, Joel and Ewend, Matthew and Sawyer, Lynda and Wu, Junyuan and Liu, Yudong and Nanda, Rita and Tretiakova, Maria and Orrico, Alejandra and Dreher, Donna and Palazzo, Juan and Perreard, Laurent and Nelson, Edward and Mone, Mary and Hansen, Heidi and Mullins, Michael and Quackenbush, John and Ellis, Matthew and Olopade, Olufunmilayo and Bernard, Philip and Perou, Charles (2006) "The molecular portraits of breast tumors are conserved across microarray platforms", BMC Genomics, 7(96)


[Package genefu version 2.26.0 Index]