peakMatch {flowClust}R Documentation

Function to match peaks across samples

Description

Uses the hungarian algorithm to match peaks across samples, one at a time using a template sample.

Usage

peakMatch(peaks, target.index, max.fill = 1e+12)

Arguments

peaks

is the matrix of peaks in the columns and samples in the rows

target.index

is the index of the template sample.

max.fill

is the value to substitute for NAs in the distance matrix. Should be very large, but if too large, will overflow and give an incorrect matching


[Package flowClust version 3.32.0 Index]