readEDS {fishpond}R Documentation

readEDS - a utility function for quickly reading in Alevin's EDS format

Description

readEDS - a utility function for quickly reading in Alevin's EDS format

Usage

readEDS(numOfGenes, numOfOriginalCells, countMatFilename, tierImport = FALSE)

Arguments

numOfGenes

number of genes

numOfOriginalCells

number of cells

countMatFilename

pointer to the EDS file, quants_mat.gz

tierImport

whether the countMatFilename refers to a quants tier file

Value

a genes x cells sparse matrix, of the class dgCMatrix


[Package fishpond version 2.0.1 Index]