writeFemap {fedup}R Documentation

Writes an enrichment dataset file for use in Cytoscape EnrichmentMap.

Description

Writes an enrichment dataset file for use in Cytoscape EnrichmentMap.

Usage

writeFemap(results, resultsFolder)

Arguments

results

(list) list with ouput results from runFedup

resultsFolder

(char) name of folder to store result file(s)

Value

Table of pathway enrichment and depletion results formatted as a 'Generic results file'. Rows represent tested pathways. Columns represent:

Examples

# Load example data
data(geneDouble)
data(pathwaysGMT)
# Run fedup
fedupRes <- runFedup(geneDouble, pathwaysGMT)
# Write out results to temp folder
resultsFolder <- tempdir()
writeFemap(fedupRes, resultsFolder)

[Package fedup version 1.2.0 Index]