pairwise.change.occupancy {fCI} | R Documentation |
find the targets whose fold changes occur consistently (upregulated or downregulated) in all fCI analysis
pairwise.change.occupancy(common.ids, pairwise.index, pairwise.up.down, target.ratio)
common.ids |
the gene ids that are differentially expressed |
pairwise.index |
a list of the genes ids that differentially expressed in each of the fCI analysis |
pairwise.up.down |
a list of up regulatio (+1) or downregulation (-1) for each gene in fCI analysis |
target.ratio |
the expected fold changes |
TBD
consistent targets |
Gene (indexes) that are consistently changed in fCI pairwise analysis |
direction |
Gene (indexes) that are consistently upregulated (if < 0) or upregulated (if > 0) |
TBD
Shaojun Tang
http://software.steenlab.org/fCI/
TBD
common.ids=6:13 pairwise.index=list(c(4:13), c(6:15)) pairwise.up.down=list(c(sample(c(-1,1), 10, replace=TRUE)), c(sample(c(-1,1), 10, replace=TRUE))) target.ratio=0.5 pairwise.change.occupancy(common.ids, pairwise.index, pairwise.up.down, target.ratio)