LibraryType-methods {exomePeak2} | R Documentation |
Method LibraryType
Accessor to the slot LibraryType
in class MeripBamFileList
.
LibraryType(x) ## S4 method for signature 'MeripBamFileList' LibraryType(x)
x |
a |
a value for the library type of MeRIP-seq experiment.
GENE_ANNO_GTF = system.file("extdata", "example.gtf", package="exomePeak2") f1 = system.file("extdata", "IP1.bam", package="exomePeak2") f2 = system.file("extdata", "IP2.bam", package="exomePeak2") f3 = system.file("extdata", "IP3.bam", package="exomePeak2") f4 = system.file("extdata", "IP4.bam", package="exomePeak2") IP_BAM = c(f1,f2,f3,f4) f1 = system.file("extdata", "Input1.bam", package="exomePeak2") f2 = system.file("extdata", "Input2.bam", package="exomePeak2") f3 = system.file("extdata", "Input3.bam", package="exomePeak2") INPUT_BAM = c(f1,f2,f3) f1 = system.file("extdata", "treated_IP1.bam", package="exomePeak2") TREATED_IP_BAM = c(f1) f1 = system.file("extdata", "treated_Input1.bam", package="exomePeak2") TREATED_INPUT_BAM = c(f1) MeRIP_Seq_Alignment <- scanMeripBAM( bam_ip = IP_BAM, bam_input = INPUT_BAM, paired_end = FALSE ) LibraryType(MeRIP_Seq_Alignment)