plotMetricsCluster {evaluomeR} | R Documentation |
Metric values clustering.
Description
It clusters the value of the metrics in a SummarizedExperiment
object as a boxplot.
Usage
plotMetricsCluster(data, scale = FALSE)
Arguments
data |
A SummarizedExperiment .
The SummarizedExperiment must contain an assay with the following structure:
A valid header with names. The first column of the header is the ID or name
of the instance of the dataset (e.g., ontology, pathway, etc.) on which the
metrics are measured.
The other columns of the header contains the names of the metrics.
The rows contains the measurements of the metrics for each instance in the dataset.
|
scale |
Boolean. If true input data is scaled. Default: FALSE.
|
Value
An hclust object.
Examples
# Using example data from our package
data("ontMetrics")
plotMetricsCluster(ontMetrics, scale=TRUE)
[Package
evaluomeR version 1.10.0
Index]