annotLODR {erccdashboard} | R Documentation |
Annotate signal-abundance and ratio-abundance plots with LODR
annotLODR(exDat)
exDat |
list, contains input data and stores analysis results |
data(SEQC.Example) exDat <- initDat(datType="array", isNorm=FALSE, exTable=UHRR.HBRR.arrayDat, filenameRoot="testRun", sample1Name="UHRR", sample2Name="HBRR", erccmix="RatioPair", erccdilution = 1, spikeVol = 50, totalRNAmass = 2.5*10^(3), choseFDR=0.01) exDat <- est_r_m(exDat) exDat <- dynRangePlot(exDat) exDat <- geneExprTest(exDat) exDat <- estLODR(exDat, kind="ERCC", prob=0.9) exDat <- annotLODR(exDat) exDat$Figures$maPlot